Model

scVI

model.SCVI(adata[, n_hidden, n_latent, …])

single-cell Variational Inference [Lopez18].

scANVI

model.SCANVI(adata, unlabeled_category[, …])

Single-cell annotation using variational inference [Xu19].

totalVI

model.TOTALVI(adata[, n_latent, …])

total Variational Inference [GayosoSteier20].

Linearly-decoded scVI

model.LinearSCVI(adata[, n_hidden, …])

Linearly-decoded VAE [Svensson20].

AutoZI

model.AUTOZI(adata[, n_hidden, n_latent, …])

Automatic identification of ZI genes [Clivio19]

gimVI

model.GIMVI(adata_seq, adata_spatial[, …])

Joint VAE for imputing missing genes in spatial data [Lopez19].