scvi.core.models.VAEMixin

class scvi.core.models.VAEMixin[source]

Methods

get_elbo([adata, indices, batch_size])

Return the ELBO for the data.

get_latent_representation([adata, indices, …])

Return the latent representation for each cell.

get_marginal_ll([adata, indices, …])

Return the marginal LL for the data.

get_reconstruction_error([adata, indices, …])

Return the reconstruction error for the data.

train([n_epochs, train_size, test_size, lr, …])

Trains the model using amortized variational inference.